MA. DEL SOCORRO GAMA CASTRO



DATOS GENERALES NOMBRAMIENTOS
Nombre completo   MA. DEL SOCORRO GAMA CASTRO
Máximo nivel de estudios   MAESTRÍA
Antigüedad académica en la UNAM   22 años

Vigente   TECNICO ACADEMICO TITULAR C TC Definitivo
Centro de Ciencias Genómicas
Desde 16-08-2012
ESTIMULOS, PROGRAMAS, PREMIOS Y RECONOCIMIENTOS
* SNI I2009 - 2015
* SNI C2008
* PRIDE D2021 - 2022
INFORMACIÓN DE PUBLICACIONES
Firmas  
Gama Castro S. Gama-Castro S. Gama-Castro, S Gama-Castro, S. Gama-Castro, Socorro
ID's SCOPUS  
6507230171
Áreas de conocimiento  
Biochemistry & molecular biology Biochemistry and molecular biology Biology Biophysics Biotechnology & applied microbiology
Genetics and heredity Jcs 2008 Mathematical & computational biology Mathematical and computational biology Medicine, research & experimental
Microbiology Multidisciplinary sciences Parasitology Scie jcr Biomedical engineering
Biophysics Computational mathematics Ecology, evolution, behavior and systematics Genetics Health informatics
Information systems Medicine (miscellaneous) Microbiology Microbiology (medical)
Coautorías con entidades de la UNAM  
  • Consejo Técnico y Coordinación de la Investigación Científica
  • Centro de Ciencias Genómicas
  • Centro de Ciencias Aplicadas y Desarrollo Tecnológico
  • Laboratorio Internacional de Investigación Sobre el Genoma Humano
  • Instituto de Investigaciones Biomédicas
  • Instituto de Biotecnología
 Revistas en las que ha publicado  (17):
  1. Archives Of Medical Research, México (1997)
  2. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, Países Bajos (2021)
  3. Bioinformatics, Reino Unido (2019)
  4. BIOTECHNOLOGY AND BIOENGINEERING, Estados Unidos America (2003)
  5. Bmc Bioinformatics, Reino Unido (2006)
  6. BMC BIOLOGY, Reino Unido (2018)
  7. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, Reino Unido (2014, 2016, 2017, 2020)
  8. EcoSal Plus, Estados Unidos America (2014, 2018, 2023)
  9. Frontiers in Bioengineering and Biotechnology, Suiza (2022)
  10. Frontiers in Genetics, Suiza (2024)
  11. FRONTIERS IN MICROBIOLOGY, Suiza (2021)
  12. JOURNAL OF BACTERIOLOGY, Estados Unidos America (2001, 2009)
  13. JOURNAL OF BIOMEDICAL SEMANTICS, Reino Unido (2019)
  14. Microbial Genomics, (2022)
  15. MICROBIOLOGY-SGM, Reino Unido (2011)
  16. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, Países Bajos (1998)
  17. NUCLEIC ACIDS RESEARCH, Reino Unido (2000, 2001, 2002, 2004, 2005, 2006, 2007, 2008, 2009, 2011, 2013, 2014, 2016, 2017, 2019, 2024)


Documentos indexados (WoS y Scopus)

# Título del documento Autores Año Rista Fuente Citas WoS Citas Scopus
1RegulonDB v12.0:ã comprehensive resource of transcriptional regulation in E. coli K-122ᵒ autor: Gama-Castro S., Salgado H., Lara P., Mejia-Almonte C., et al.2024NUCLEIC ACIDS RESEARCHWoS-id: 001102810900001
Scopus-id: 2-s2.0-85181777832
11
2Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types2ᵒ autor: Gama-Castro S., Lara P., Salgado H., Rioualen C., et al.2024Frontiers in GeneticsWoS-id: 001186999100001
Scopus-id: 2-s2.0-85188101282
00
3The EcoCyc Database (2023)Coautor: Gama-Castro S., Karp P.D., Paley S., Caspi R., et al.2023EcoSal PlusScopus-id: 2-s2.0-85176768413
06
4Sensory Systems and Transcriptional Regulation in Escherichia coli2ᵒ autor: Gama-Castro, Socorro, Femerling, Georgette, Lara, Paloma, Ledezma-Tejeida, Daniela, et al.2022Frontiers in Bioengineering and BiotechnologyWoS-id: 000761661300001
Scopus-id: 2-s2.0-85125402152
44
5RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12Coautor: Gama-Castro S., Tierrafría V.H., Rioualen C., Salgado H., et al.2022Microbial GenomicsWoS-id: 000812938700011
Scopus-id: 2-s2.0-85130765382
1531
6The EcoCyc Database in 20212ᵒ autor: Gama-Castro, Socorro, Keseler, Ingrid M., Mackie, Amanda, Billington, Richard, et al.2021FRONTIERS IN MICROBIOLOGYWoS-id: 000683854200001
Scopus-id: 2-s2.0-85112326830
55106
7Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteriaCoautor: Gama-Castro S., Díaz-Rodríguez M., Lithgow-Serrano O., Guadarrama-García F., et al.2021BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMSWoS-id: 000703308500001
Scopus-id: 2-s2.0-85115326527
23
8Knowledge extraction for assisted curation o f summaries of bacterial transcription factor prorertiesCoautor: Gama-Castro, Socorro, Mendez-Cruz, Carlos-Francisco, Blanchet, Antonio, Godinez, Alan, et al.2020DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000601278100001
Scopus-id: 2-s2.0-85098471761
12
9RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12Coautor: Gama-Castro S., Santos-Zavaleta A., Salgado H., Sánchez-Pérez M., et al.2019NUCLEIC ACIDS RESEARCHWoS-id: 000462587400034
Scopus-id: 2-s2.0-85059797142
224235
10MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditionsCoautor: Gama-Castro, S., Tierrafria, V. H., Mejia-Almonte, C., Camacho-Zaragoza, J. M., et al.2019BioinformaticsWoS-id: 000467227300017
Scopus-id: 2-s2.0-85062289226
33
11Similarity corpus on microbial transcriptional regulation2ᵒ autor: Gama-Castro S., Lithgow-Serrano O., Ishida-Gutiérrez C., Mejía-Almonte C., et al.2019JOURNAL OF BIOMEDICAL SEMANTICSWoS-id: 000468929800001
Scopus-id: 2-s2.0-85066457982
89
12A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0Coautor: Gama-Castro S., Santos-Zavaleta A., Sánchez-Pérez M., Salgado H., et al.2018BMC BIOLOGYWoS-id: 000441842200001
Scopus-id: 2-s2.0-85051701959
3032
13The EcoCyc DatabaseCoautor: Gama-Castro S., Karp P.D., Ong W.K., Paley S., et al.2018EcoSal PlusScopus-id: 2-s2.0-85056491267
052
14The EcoCyc database: reflecting new knowledge about Escherichia coli K-12Coautor: Gama-Castro, Socorro, Keseler, Ingrid M., Mackie, Amanda, Santos-Zavaleta, Alberto, et al.2017NUCLEIC ACIDS RESEARCHWoS-id: 000396575500076
Scopus-id: 2-s2.0-85015989839
376388
15Strategies towards digital and semi-automated curation in RegulonDBCoautor: Gama-Castro, S., Rinaldi, F., Lithgow, O., Solano, H., et al.2017DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000397531600001
Scopus-id: 2-s2.0-85015961548
37
16First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes2ᵒ autor: Gama-Castro, Socorro, Mendez-Cruz, Carlos-Francisco, Mejia-Almonte, Citlalli, Castillo-Villalba, Marco-Polo, et al.2017DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000412308000001
Scopus-id: 2-s2.0-85050188913
56
17Strategies towards digital and semi-automated curation in RegulonDB (vol 2017, bax012, 2017)Coautor: Gama-Castro, Socorro, Rinaldi, Fabio, Lithgow, Oscar, Solano, Hilda, et al.2017DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000427186500001
Scopus-id: 2-s2.0-85063712388
00
18RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond1ᵉʳ autor: Gama-Castro, Socorro, Salgado, Heladia, Santos-Zavaleta, Alberto, Ledezma-Tejeida, Daniela, et al.2016NUCLEIC ACIDS RESEARCHWoS-id: 000371261700018
Scopus-id: 2-s2.0-84976874666
334351
19COLOMBOS v3.0: leveraging gene expression compendia for cross- species analysesCoautor: Gama-Castro, Socorro, Moretto, Marco, Sonego, Paolo, Dierckxsens, Nicolas, et al.2016NUCLEIC ACIDS RESEARCHWoS-id: 000371261700087
Scopus-id: 2-s2.0-84976905759
4847
20Overview of the interactive task in BioCreative VCoautor: Gama-Castro, Socorro, Wang, Qinghua, Abdul, Shabbir S., Almeida, Lara, et al.2016DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000383834100001
Scopus-id: 2-s2.0-85009926974
2428
21COLOMBOS v2.0: An ever expanding collection of bacterial expression compendiaCoautor: Gama-Castro S., Meysman P., Sonego P., Bianco L., et al.2014NUCLEIC ACIDS RESEARCHWoS-id: 000331139800095
Scopus-id: 2-s2.0-84891750356
3030
22Assisted curation of regulatory interactions and growth conditions of OxyR in E. Colik-121ᵉʳ autor: Gama-Castro S., Rinaldi F., López-Fuentes A., Balderas-Martínez Y.I., et al.2014DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATIONWoS-id: 000338567900001
Scopus-id: 2-s2.0-84987638658
109
23The EcoCyc databaseCoautor: Gama-Castro S., Karp P.D., Weaver D., Paley S., et al.2014EcoSal PlusScopus-id: 2-s2.0-84932633215
055
24RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and moreCoautor: Gama-Castro, S, Salgado, H, Peralta-Gil, M, Santos-Zavaleta, A, et al.2013NUCLEIC ACIDS RESEARCHWoS-id: 000312893300028
Scopus-id: 2-s2.0-84876543942
325339
25EcoCyc: fusing model organism databases with systems biologyCoautor: Gama-Castro S., Keseler I.M., Mackie A., Peralta-Gil M., et al.2013NUCLEIC ACIDS RESEARCHWoS-id: 000312893300086
Scopus-id: 2-s2.0-84876556918
425436
26RegulonDB version 7.0: Transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)1ᵉʳ autor: Gama-Castro S., Salgado H., Peralta-Gil M., Santos-Zavaleta A., et al.2011NUCLEIC ACIDS RESEARCHWoS-id: 000285831700018
Scopus-id: 2-s2.0-78651299341
274293
27EcoCyc: a comprehensive database of Escherichia coli biologyCoautor: Gama-Castro S., Keseler I.M., Collado-Vides J., Santos-Zavaleta A., et al.2011NUCLEIC ACIDS RESEARCHWoS-id: 000285831700092
Scopus-id: 2-s2.0-78651281217
332373
28A comparative genome analysis of the RpoS sigmulon shows a high diversity of responses and origins2ᵒ autor: Gama-Castro, S, Santos-Zavaleta, A, Perez-Rueda, E2011MICROBIOLOGY-SGMWoS-id: 000291179900015
Scopus-id: 2-s2.0-79955767137
89
29Bioinformatics Resources for the Study of Gene Regulation in BacteriaCoautor: Gama-Castro, S, Collado-Vides, J, Salgado, H, Morett, E, et al.2009JOURNAL OF BACTERIOLOGYWoS-id: 000261628100002
Scopus-id: 2-s2.0-58149495994
2021
30EcoCyc: A comprehensive view of Escherichia coli biologyCoautor: Gama-Castro S., Keseler I.M., Bonavides-Martínez C., Collado-Vides J., et al.2009NUCLEIC ACIDS RESEARCHWoS-id: 000261906200084
Scopus-id: 2-s2.0-58149179979
276302
31RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation1ᵉʳ autor: Gama-Castro, S, Jimenez-Jacinto, V, Peralta-Gil, M, Santos-Zavaleta, A, et al.2008NUCLEIC ACIDS RESEARCHWoS-id: 000252545400022
Scopus-id: 2-s2.0-38549140094
371399
32Multidimensional annotation of the Escherichia coli K-12 genomeCoautor: Gama-Castro S., Karp P.D., Keseler I.M., Shearer A., et al.2007NUCLEIC ACIDS RESEARCHWoS-id: 000252125900021
Scopus-id: 2-s2.0-38049007503
130148
33The comprehensive updated regulatory network of Escherichia coli K-12Coautor: Gama-Castro S., Salgado H., Santos-Zavaleta A., Peralta-Gil M., et al.2006Bmc BioinformaticsWoS-id: 000235550300001
Scopus-id: 2-s2.0-30644465547
5048
34RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions.2ᵒ autor: Gama-Castro S., Salgado H., Peralta-Gil M., Díaz-Peredo E., et al.2006NUCLEIC ACIDS RESEARCHWoS-id: 000239307700086
Scopus-id: 2-s2.0-33644873438
265297
35EcoCyc: A comprehensive database resource for Escherichia coliCoautor: Gama-Castro S., Keseler I.M., Collado-Vides J., Ingraham J., et al.2005NUCLEIC ACIDS RESEARCHWoS-id: 000226524300069
Scopus-id: 2-s2.0-13444262374
513577
36RegulonDB (version 4.0): Transcriptional regulation, operon organization and growth conditions in Escherichia coli K-122ᵒ autor: Gama-Castro S., Salgado H., Martínez-Antonio A., Díaz-Peredo E., et al.2004NUCLEIC ACIDS RESEARCHWoS-id: 000188079000071
Scopus-id: 2-s2.0-9144270496
192226
37Environmental Conditions and Transcriptional Regulation in Escherichia coli: A Physiological Integrative ApproachCoautor: Gama-Castro S., Martínez-Antonio A., Salgado H., Gutiérrez-Ríos R.M., et al.2003BIOTECHNOLOGY AND BIOENGINEERINGWoS-id: 000187634500003
Scopus-id: 2-s2.0-0348062847
1515
38The EcoCyc databaseCoautor: Gama-Castro S., Karp P.D., Riley M., Saier M., et al.2002NUCLEIC ACIDS RESEARCHWoS-id: 000173077100013
Scopus-id: 2-s2.0-0036084127
307347
39RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12Coautor: Gama-Castro S., Salgado H., Santos-Zavaleta A., Millán-Zárate D., et al.2001NUCLEIC ACIDS RESEARCHWoS-id: 000166360300017
Scopus-id: 2-s2.0-0035162782
178190
40Azotobacter vinelandii aldehyde dehydrogenase regulated by s54: Role in alcohol catabolism and encystment1ᵉʳ autor: Gama-Castro S., Núñez C., Segura D., Moreno S., et al.2001JOURNAL OF BACTERIOLOGYWoS-id: 000171577200003
Scopus-id: 2-s2.0-0035688256
56
41RegulonDB (version 3.0): Transcriptional regulation and operon organization in Escherichia coli K-12Coautor: Gama-Castro S., Salgado H., Santos-Zavaleta A., Millán-Zárate D., et al.2000NUCLEIC ACIDS RESEARCHWoS-id: 000084896300016
Scopus-id: 2-s2.0-0033971476
5049
42Cloning and expression of the Entamoeba histolytica ERD2 gene2ᵒ autor: Gama-Castro S., Sanchez-Lopez R., Ramos M.A., Merino E., et al.1998MOLECULAR AND BIOCHEMICAL PARASITOLOGYWoS-id: 000074044800015
Scopus-id: 2-s2.0-0032078829
2019
43The secretory pathway of Entamoeba histolytica: Characterization and expression of the ERD2 gene2ᵒ autor: Gama Castro S., Sanchez-Lopez R., Lizardi P.M., Alagon A.1997Archives Of Medical ResearchScopus-id: 2-s2.0-0031024067
02

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